Therapeutic Targets Database
BIDD Pharmainformatics Databases


TTD Target ID: TTDC00150

Target Information
NameCollagenase 3    
Type of targetDiscontinued target    
Matrix metalloproteinase 13    
Matrix metalloproteinase-13    
DiseaseBrain Cancer
[ICD9: 191   ICD10: C71]
Hormone-refractory Prostate cancer
[ICD9: 185   ICD10: C61]
Kaposi's Sarcoma
[ICD9: 176   ICD10: C46]
Lung Cancer
[ICD9: 162   ICD10: C33-C34]
Myocardial infarction (MI)
[ICD9: 410   ICD10: I21, I22]
Non-small Cell Lung Cancer
[ICD9: 162   ICD10: C33, C34]
[ICD9: 715   ICD10: M15-M19, M47]
Prostate cancer
[ICD9: 185   ICD10: C61]
Squamous cell carcinoma
[ICD9: 199   ICD10: C44]
BioChemical ClassHydrolases acting on peptide bonds (Peptidases)    
EC NumberEC 3.4.24.-
UniProt IDP45452
PDB Structure1EUB; 1FLS; 1FM1; 1PEX; 1UC1; 1XUC; 1XUD; 1XUR; 1YOU; 1ZTQ; 2D1N; 2E2D; 2OW9; 2OZR; 2PJT; 2YIG; 3ELM; 3I7G; 3I7I; 3KEC; 3KEJ; 3KEK; 3KRY; 3LJZ; 3O2X; 3TVC; 3ZXH; 456C; 4A7B; 830C.    
FunctionDegrades collagen type i. Does not act on gelatin or casein. Could have a role in tumoral process.    
Related US Patent6,265,432
Target ValidationClick to Find Target Validation Information.    
QSAR ModelClick to Find Target QSAR Model.    
Inhibitor (+/-)5-[9]
1- (4-Methoxy-benzenesulfonyl)-heptane-3-thiol[10]
2- (2-[9]
2- (4-methoxybenzylthio)-6-methylpyrimidin-4-ol[12]
2- (Biphenyl-4-ylsulfonyl)N-hydroxybenzamide[13]
2- (biphenyl-4-ylsulfonamido)pentanedioic acid[12]
3- (4-Methoxy-benzenesulfonyl)-cyclohexanethiol[14]
3- (4-Methoxy-benzenesulfonyl)-cyclopentanethiol[14]
3- (4-Methoxy-benzenesulfonyl)-hexane-1-thiol[10]
3- (4-Methoxy-benzenesulfonyl)-pentane-1-thiol[10]
3- (4-Methoxy-benzenesulfonyl)-propane-1-thiol[10]
3- (4-Phenoxy-benzenesulfonyl)-cyclohexanethiol[14]
3- (4-Phenoxy-benzenesulfonyl)-propane-1-thiol[10]
3-Benzenesulfonyl-heptanoic acid hydroxyamide[15]
3-Cyclohexanesulfonyl-heptanoic acid hydroxyamide[15]
4- (2,2'-bithiophen-5-ylmethyleneamino)phenol[16]
4- (4-Methoxy-benzenesulfonyl)-butane-2-thiol[10]
4- (methyl[16]
4-amino-3- (4-[12]
5- (4'-cyanobiphenyl-4-yl)-3-hydroxypentanoic acid[9]
N-Hydroxy-2- (4-phenoxy-benzenesulfonyl)benzamide[13]
N1,N3-bis (3-methoxybenzyl)isophthalamide[21]
PKF-242-484,   TNF-484[18]
[2- (Biphenyl-4-sulfonyl)phenyl]acetic Acid[13]
ethyl 2-cyano-2- (quinoxalin-2[16]
Cross References 3D Structure
Related Literature
On-Line Medical Dictionary
Ref 1Inhibition of gelatinase activity reduces neural injury in an ex vivo model of hypoxia-ischemia. Neuroscience. 2009 Jun 2;160(4):755-66. Epub 2009 Mar 9. To Reference
Ref 2Delayed administration of a matrix metalloproteinase inhibitor limits progressive brain injury after hypoxia-ischemia in the neonatal rat. J Neuroinflammation. 2008 Aug 11;5:34. To Reference
Ref 3Pharmacoproteomics of a metalloproteinase hydroxamate inhibitor in breast cancer cells: dynamics of membrane type 1 matrix metalloproteinase-mediated membrane protein shedding. Mol Cell Biol. 2008 Aug;28(15):4896-914. Epub 2008 May 27. To Reference
Ref 4Phase 1/2 trial of BMS-275291 in patients with human immunodeficiency virus-related Kaposi sarcoma: a multicenter trial of the AIDS Malignancy Consortium. Cancer. 2008 Mar 1;112(5):1083-8. To Reference
Ref 5Randomized phase II feasibility study of combining the matrix metalloproteinase inhibitor BMS-275291 with paclitaxel plus carboplatin in advanced non-small cell lung cancer. Lung Cancer. 2004 Dec;46(3):361-8. To Reference
Ref 6Am J Physiol Heart Circ Physiol. 2006 Jun;290(6):H2522-7. Epub 2006 Jan 20.Selective matrix metalloproteinase inhibition attenuates progression of left ventricular dysfunction and remodeling in dogs with chronic heart failure. To Reference
Ref 7Impairment of the collagenase-3 endocytotic receptor system in cells from patients with osteoarthritis. Osteoarthritis Cartilage. 2003 Dec;11(12):854-63. To Reference
Ref 8Targeted inhibition of human collagenase-3 (MMP-13) expression inhibits squamous cell carcinoma growth in vivo. Oncogene. 2004 Jul 1;23(30):5111-23. To Reference
Ref 9Bioorg Med Chem Lett. 2009 Oct 1;19(19):5760-3. Epub 2009 Aug 6.The identification of beta-hydroxy carboxylic acids as selective MMP-12 inhibitors. To Reference
Ref 10Bioorg Med Chem Lett. 1999 Apr 5;9(7):943-8.Discovery of a novel series of selective MMP inhibitors: identification of the gamma-sulfone-thiols. To Reference
Ref 11Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. To Reference
Ref 12Bioorg Med Chem. 2009 Feb 1;17(3):1101-8. Epub 2008 Mar 8.Ranking the selectivity of PubChem screening hits by activity-based protein profiling: MMP13 as a case study. To Reference
Ref 13J Med Chem. 2009 Oct 22;52(20):6347-61.Design, synthesis, biological evaluation, and NMR studies of a new series of arylsulfones as selective and potent matrix metalloproteinase-12 inhibitors. To Reference
Ref 14Bioorg Med Chem Lett. 1999 Jul 5;9(13):1757-60.Synthesis and identification of conformationally constrained selective MMP inhibitors. To Reference
Ref 15J Med Chem. 2000 Jun 15;43(12):2324-31.Hydroxamic acid derivatives as potent peptide deformylase inhibitors and antibacterial agents. To Reference
Ref 16Bioorg Med Chem. 2009 Feb 1;17(3):990-1005. Epub 2008 Mar 6.High throughput screening of potentially selective MMP-13 exosite inhibitors utilizing a triple-helical FRET substrate. To Reference
Ref 17Bioorg Med Chem Lett. 2001 Apr 23;11(8):1009-13.Heterocycle-based MMP inhibitors with P2' substituents. To Reference
Ref 18Bioorg Med Chem Lett. 2006 May 15;16(10):2632-6. Epub 2006 Mar 3.A cassette-dosing approach for improvement of oral bioavailability of dual TACE/MMP inhibitors. To Reference
Ref 19J Med Chem. 2002 Nov 7;45(23):4954-7.Discovery of gamma-lactam hydroxamic acids as selective inhibitors of tumor necrosis factor alpha converting enzyme: design, synthesis, and structure-activity relationships. To Reference
Ref 20J Biol Chem. 2007 Sep 21;282(38):27781-91. Epub 2007 Jul 10.Discovery and characterization of a novel inhibitor of matrix metalloprotease-13 that reduces cartilage damage in vivo without joint fibroplasia side effects. To Reference
Ref 21Bioorg Med Chem Lett. 2010 Jan 15;20(2):576-80. Epub 2009 Nov 22.Discovery of (pyridin-4-yl)-2H-tetrazole as a novel scaffold to identify highly selective matrix metalloproteinase-13 inhibitors for the treatment of osteoarthritis. To Reference
Ref 22Bioorg Med Chem Lett. 2009 Jan 1;19(1):47-50. Epub 2008 Nov 18.Calculation of binding free energies for non-zinc chelating pyrimidine dicarboxamide inhibitors with MMP-13. To Reference
Ref 23Bioorg Med Chem Lett. 2005 Feb 15;15(4):1101-6.Structure-based design of potent and selective inhibitors of collagenase-3 (MMP-13). To Reference
Ref 24Bioorg. Med. Chem. Lett. 7(17):2299-2302 (1997) To Reference
Ref 25Bioorg Med Chem Lett. 2006 May 1;16(9):2357-63. Epub 2006 Feb 10.Synthesis and evaluation of succinoyl-caprolactam gamma-secretase inhibitors. To Reference
Ref 26Bioorg Med Chem Lett. 2006 Mar 15;16(6):1605-9. Epub 2006 Jan 19.Acetylenic TACE inhibitors. Part 3: Thiomorpholine sulfonamide hydroxamates. To Reference
Ref 27J Med Chem. 2003 Jul 31;46(16):3514-25.A potent, selective inhibitor of matrix metalloproteinase-3 for the topical treatment of chronic dermal ulcers. To Reference


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