Some important antibody or/and antigen databases
| Database | Description | URL |
| the international ImMunoGeneTics information system (IMGT) | A high-quality integrated knowledge resource specialized in the immunoglobulins (IG), T cell receptors (TCR), major histocompatibility complex (MHC), immunoglobulin superfamily (IgSF) and MhcSF. It consists of sequence databases (IMGT/LIGM-DB, IMGT/MHC-DB, IMGT/PRIMER-DB), genome database (IMGT/GENE-DB) and structure database (IMGT/3Dstructure-DB) | http://imgt.cines.fr/ |
| Molecular Modeling Database (MMDB) | 3D macromolecular structures, including antibody, HLA, TCRs | http://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml |
| The Immune Epitope Databaseand Analysis Resource (IEDB) | Data related to antibody and T cell epitopes, MHC binding data for human and some animal species | www.immuneepitope.org |
| VIR | Public 3D-structure of known antibodies and an interface with the antibody sequences in the Kabat database | http://www.ibt.unam.mx/vir/structure/structures.html |
| SYFPEITHI | Sequences of T-cell epitopes and MHC ligands | http://www.syfpeithi.de/ |
| Summary of Antibody Crystal Structures (SACS) | All antibody structures in the Protein Databank | http://www.bioinf.org.uk/abs/sacs/ |
| Functional molecular immunology database (FIMM) | MHC, antigens, T- and B-cell epitopes | http://research.i2r.a-star.edu.sg/fimm/ |
| JenPep | Quantitative binding data for immunological protein-peptide interactions | http://www.jenner.ac.uk/JenPep |
| HLA Sequence Database | HLA sequence | http://www.anthonynolan.org.uk/HIG/index.html |
| MHCBN | MHC binding, non-binding peptides and T-cell epitopes | http://www.imtech.res.in/raghava/mhcbn/ |
| dbMHC | DNA and clinical data related to HLA | http://www.ncbi.nlm.nih.gov/mhc/MHC.cgi?cmd=init |
| Blood Group Antigen Gene Mutation Database (BGMUT) | Variations in genes that directly or indirectly affect our blood groups. Allelic genes of blood group antigens | http://www.ncbi.nlm.nih.gov/projects/mhc/xslcgi.fcgi?cmd=bgmut/home |
| BCIPEP | B cell epitope database | http://www.imtech.res.in/raghava/bcipep |
| VBASE2 | Germ-line sequences of human and mouse immunoglobulin variable (V) genes | http://vbase.mrc-cpe.cam.ac.uk |
| TumorAntigen database | A listing of human tumor antigens recognized by T cells | http://sdmc.i2r.a-star.edu.sg/Templar/DB/cancer_antigen/ |
| HIV molecular immunology database | A collection of HIV-1 cytotoxic and helper T-cell epitopes and antibody binding sites | http://www.hiv.lanl.gov/content/immunology/index.html |
| HCV Immunology database | A collection of HCV cytotoxic and helper T-cell epitopes and antibody binding sites | http://hcv.lanl.gov/content/immuno/immuno-main.html |
| EPIMHC | A relational database of MHC-binding peptides and T cell epitopes that are observed in real proteins | http://immunax.dfci.harvard.edu/bioinformatics/epimhc/ |
| AntiJen | Quantitative binding data for B cell epitopes | http://www.jenner.ac.uk/AntiJen/ |
| HaptenDB | listing of haptens, structural similarity searches, and antibody and biological information | http://bioinformatics.uams.edu/raghava/haptendb/ |
| epitome database | All known antigenic residues and corresponding antibodies from PDB entries | http://www.rostlab.org/services/epitome/ |
| CED | A conformational epitope database | http://web.kuicr.kyoto-u.ac.jp/~ced/ |
Other useful websites
1. Antibody Resource Page: Guide to antibody research and suppliers.
2. AAAAA (AHo's Amazing Atlas of Antibody Anatomy): antibody structural analysis and modeling
3. Antibody Structure and Sequence Information: Andrew C.R. Martin's Bioinformatics Group at UCL.